Edit Section: Ubuntu 16.04 LTS for Human Beans

!!!# R

!!!!# R v3.4.x

Si empres R, et caldran paquets extra de sistema per a instal·lar alguns paquets d'R i eines habituals associades (git, svn, etc). Pots posar les dependències habituals amb:

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sudo apt-get install -y  r-recommended  r-cran-xml libgraphviz-dev libcairo2-dev r-cran-cairodevice freeglut3 freeglut3-dev r-cran-rglpk r-cran-rgl r-cran-misc3d libx11-dev libxt-dev libcurl4-gnutls-dev libxml2-dev r-cran-xml libgraphviz-dev libcairo2-dev bwidget tk-table libv8-dev r-cran-rjava libmpfr-dev libc6 libssl-dev texlive-latex-extra texlive-lang-spanish libx11-dev libxml2-dev libxml2:i386 libxt-dev r-cran-misc3d subversion git texmaker tk-dev unaccent xvfb libgdal1-dev libproj-dev r-cran-rmysql libmagick++-dev r-cran-rcolorbrewer r-cran-doparallel libssh2-1-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libjq-dev libprotobuf-dev protobuf-compiler libssl-dev libcairo2-dev dos2unix pandoc r-cran-rmio

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Usual R packages that are useful in many cases. You can install them in an R console in a terminal (Type "R" in the terminal to launch the R console), or through RStudio command line:

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install.packages(c("devtools", "plotly", "Nozzle.R1", "VennDiagram", "stringr", "xml2", "parallel", "data.table", "doParallel", "xtable", "plyr", "dplyr", "reshape2", "rjson", "d3heatmap", "htmlwidgets", "googleVis", "doMC", "Rcmdr", "knitr", "checkpoint", "XLConnect", "sem", "rmarkdown", "relimp", "effects", "aplpack", "flexdashboards", "addinslist", "tidyverse", "magick", "webshot", "pacman", "officer", "flextable", "huxtable"))

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!!!!# R v3.5.x

Si necessites R 3.5.x en Ubuntu 16.04, pots afegir un repositori extra amb les següents de sota, després de llegir aquest advertiment:

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No tots els paquets d'R es poden instal·lar sobre R 3.5.x en Ubuntu 16.04. A data d'avui, he vist que -+xml2+-, per exemple, no s'instal·la per aquest tipus de problema {sign user="Xavier" datetime="2019-03-18T14:27:49+00:00"}:

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/usr/include/unicode/ucnv.h:585:1: note: C++11 ‘noexcept’ only available with -std=c++11 or -std=gnu++11

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I per tant, els que depenen de xml2 tampoc: -+sparklyr+-, ...

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Instruccions:

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sudo apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9

sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/' # main binary packages for R 3.5.x

sudo add-apt-repository -y ppa:marutter/c2d4u3.5 # extra binary packages for R 3.5.x from the usual marruter repo

sudo apt update

sudo apt upgrade

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Si estàs actualitzant des d'una versió d'R anterior, et poden ser útils aquestes instruccions de terminal de sistema:

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sudo chmod 777 /usr/lib/R/site-library /usr/lib/R/site-library/* -R

sudo chmod 777 /usr/lib/R/library /usr/lib/R/library/* -R

sudo chmod 777 /usr/share/R/doc/html/* -R

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I aquestes altres de consola d'R:

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update.packages(ask = F, lib="/usr/lib/R/site-library")

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